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May 24, 2019 at 1:53 pm #113274
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.muscle -in seqs.fa -out seqs.afa -maxiters 1 -diags . The alignments are not bad, especially when the sequences are closely related. However, as you might expect, this blazing speed comes at the cost of the lowest average accuracy of the options that muscle provides. 2.5 Huge alignments
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