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25 Mar 2015 CAP3. SPAdes. Weight Matrix. Searching JASPAR Database. Building New ClustalW ClustalO MUSCLE Kalign MAFFT T-Coffee. Online and
If you use CAP3 in any published work, please cite the following reference: Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
25 Mar 2015 Unipro UGENE Workow Designer Manual, Version 1.17.0. 2. Workflow Designer Manual Assembly Sequences with CAP3. HMMER2 Tools .. It contains the result of the alignment with MUSCLE. How to Use Sample20 Nov 2014 CAP3 (CONTIG ASSEMBLY PROGRAM Version 3) is a sequence assembly program for small-scale assembly with or without quality values.
Cap3. Cap3 is a fragment assembly program written by Xiaoqiu Huang <xqhuang@cs.iastate.edu>. The quick-and-dirty on how to use it is: (1) login to the Unix
We describe the third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features.
rameter of the cap3 program which is used for read assembly within the clusters. . Create tree : Runs multiple sequence alignment using Muscle program.